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dc.contributor.authorCarbonell-Caballero, Jose
dc.contributor.authorAlonso, Roberto
dc.contributor.authorIbanez, Victoria
dc.contributor.authorTerol, Javier
dc.contributor.authorTalón, Manuel
dc.contributor.authorDopazo, Joaquín
dc.date.accessioned2017-06-01T10:11:27Z
dc.date.available2017-06-01T10:11:27Z
dc.date.issued2015
dc.identifier.citationCarbonell-Caballero, J., Alonso, Roberto, Ibanez, Victoria, Terol, J., Talon, M., Dopazo, J. (2015). A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus. Molecular biology and evolution, 32(8), 2015-2035.
dc.identifier.issn0737-4038
dc.identifier.urihttp://hdl.handle.net/20.500.11939/4965
dc.description.abstractCitrus genus includes some of the most important cultivated fruit trees worldwide. Despite being extensively studied because of its commercial relevance, the origin of cultivated citrus species and the history of its domestication still remain an open question. Here, we present a phylogenetic analysis of the chloroplast genomes of 34 citrus genotypes which constitutes the most comprehensive and detailed study to date on the evolution and variability of the genus Citrus. A statistical model was used to estimate divergence times between the major citrus groups. Additionally, a complete map of the variability across the genome of different citrus species was produced, including single nucleotide variants, heteroplasmic positions, indels (insertions and deletions), and large structural variants. The distribution of all these variants provided further independent support to the phylogeny obtained. An unexpected finding was the high level of heteroplasmy found in several of the analyzed genomes. The use of the complete chloroplast DNA not only paves the way for a better understanding of the phylogenetic relationships within the Citrus genus but also provides original insights into other elusive evolutionary processes, such as chloroplast inheritance, heteroplasmy, and gene selection.
dc.language.isoen
dc.titleA Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrusen
dc.typearticle
dc.authorAddressInstituto Valenciano de Investigaciones Agrarias (IVIA), Carretera CV-315, Km. 10’7, 46113 Moncada (Valencia), Españaes
dc.date.issuedFreeFormAUG 2015
dc.entidadIVIACentro de Genómica
dc.identifier.doi10.1093/molbev/msv082
dc.identifier.urlhttps://academic.oup.com/mbe/article/32/8/2015/2925553
dc.journal.abbreviatedTitleMol.Biol.Evol.
dc.journal.issueNumber8
dc.journal.titleMolecular biology and evolution
dc.journal.volumeNumber32
dc.page.final2035
dc.page.initial2015
dc.rights.accessRightsopenAccess
dc.source.typeImpreso
dc.type.hasVersionpublishedVersion


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