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dc.contributor.authorOllitrault, Patrick
dc.contributor.authorTerol, Javier
dc.contributor.authorChen, Chunxian
dc.contributor.authorFederici, Claire T.
dc.contributor.authorLotfy, Samia
dc.contributor.authorHippolyte, Isabelle
dc.contributor.authorOllitrault, Frederique
dc.contributor.authorBerard, Aurelie
dc.contributor.authorChauveau, Aurelie
dc.contributor.authorCuenca, José
dc.contributor.authorCostantino, Gilles
dc.contributor.authorKacar, Yildiz Aka
dc.contributor.authorMu, Lisa
dc.contributor.authorGarcía-Lor, Andrés
dc.contributor.authorCurk, Franck
dc.contributor.authorFroelicher, Yann
dc.contributor.authorAleza, Pablo
dc.contributor.authorBoland, Anne
dc.contributor.authorBillot, Claire
dc.contributor.authorNavarro, Luis
dc.contributor.authorLuro, Francois
dc.contributor.authorRoose, Mikeal L.
dc.contributor.authorGmitter Jr., Frederick G.
dc.contributor.authorTalón, Manuel
dc.contributor.authorBrunel, Dominique
dc.contributor.editorSabater-Munoz, Beatriz
dc.date.accessioned2017-06-01T10:09:40Z
dc.date.available2017-06-01T10:09:40Z
dc.date.issued2015
dc.identifier.citationPatrick Ollitrault, Javier Terol, Chunxian Chen, Claire T. Federici, Samia Lotfy, Isabelle Hippolyte, Frédérique Ollitrault, Aurélie Bérard, Aurélie Chauveau, José Cuenca, Gilles Costantino, Yildiz Aka Kacar, Lisa Mu, Andres Garcia-Lor, Franck Curk, Yann Froelicher, Pablo Aleza, Anne Boland, Claire Billot, Luis Navarro, François Luro, Mikeal L. Roose, Frederick G. Gmitter Jr., Manuel Talón and Dominique Brunel (2015). Comparative Genetic Mapping between Clementine, Pummelo and Sweet Orange and the Interspecicic Structure of the Clementine Genome. Acta Hortic. 1065, 561-573
dc.identifier.issn0567-7572; 978-94-62610-53-8
dc.identifier.urihttp://hdl.handle.net/20.500.11939/4244
dc.description.abstractThe availability of a saturated genetic map of Clementine was identified by the International Citrus Genome Consortium as an essential prerequisite to assist the assembly of the reference whole genome sequence based on a Clementine derived haploid. The primary goals of the present study were to establish a Clementine reference map, and to perform comparative mapping with pummelo and sweet orange. Five parental genetic maps were established with SNPs, SSRs and InDels. A medium density reference map (961 markers for 1084.1 cM) of Clementine was established and used by the ICGC to facilitate the chromosome assembly of the haploid genome sequence. Comparative mapping with pummelo and sweet orange revealed that the linear order of markers was highly conserved. Reasonable inferences of most citrus genomes should be obtained by mapping next-generation sequencing data against the haploid reference genome sequence. Skewed segregations were frequent and higher in the male than female Clementine potentially leading to false interpretation of the genetic determinism of phenotypic traits. The mapping data confirmed that Clementine arose from hybridization between 'Mediterranean' mandarin and sweet orange and identified nine recombination break points for the sweet orange gamete that contributed to the Clementine genome. Introgression of pummelo genome fragments were identified in heterozygosity in each chromosome. Moreover, it appeared that the genome of the haploid Clementine used to establish the citrus reference genome sequence was inherited primarily from the 'Mediterranean' mandarin. The usefulness of this genetic map, anchored in the reference whole genome sequence, is discussed.
dc.language.isoen
dc.titleComparative Genetic Mapping between Clementine, Pummelo and Sweet Orange and the Interspecicic Structure of the Clementine Genome
dc.title.alternativeActa Horticulturae
dc.typeconferenceObject
dc.authorAddressInstituto Valenciano de Investigaciones Agrarias (IVIA), Carretera CV-315, Km. 10’7, 46113 Moncada (Valencia), Españaes
dc.date.issuedFreeForm2015
dc.entidadIVIACentro de Citricultura y Producción Vegetal
dc.entidadIVIACentro de Genómica
dc.entidadIVIACentro de Protección Vegetal y Biotecnología
dc.identifier.doihttps://doi.org/10.17660/ActaHortic.2015.1065.71
dc.journal.titleXii International Citrus Congress - International Society of Citriculture
dc.journal.volumeNumber1065
dc.page.final573
dc.page.initial561
dc.rights.accessRightsopenAccess
dc.source.typeImpreso


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